Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06850

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2115
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27


Found at i:1173 original size:23 final size:24

Alignment explanation


    Indices: 1146--1193  Score: 64
    Period size: 23  Copynumber: 2.0  Consensus size: 24

       1136 CCTATGCTAA

                    *                
       1146 AGAGGATCGTGTA-GAAGAT-GTTG
          1 AGAGGATCCT-TAGGAAGATGGTTG

                                    
       1169 AGAGGATCCTTAGGAAGATGGTTG
          1 AGAGGATCCTTAGGAAGATGGTTG

             
       1193 A
          1 A

       1194 AAATGGTATG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  22    2  0.09
  23   15  0.68
  24    5  0.23

ACGTcount: A:0.31, C:0.06, G:0.38, T:0.25


Consensus pattern (24 bp):   
AGAGGATCCTTAGGAAGATGGTTG
Done.