Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09195

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1503
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27


Found at i:1404 original size:6 final size:6

Alignment explanation


    Indices: 1393--1417  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       1383 AGCTAAGGAA

                                         
       1393 GAAGCT GAAGCT GAAGCT GAAGCT G
          1 GAAGCT GAAGCT GAAGCT GAAGCT G

       1418 CGACTGCCAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.32, C:0.16, G:0.36, T:0.16


Consensus pattern (6 bp):   
GAAGCT

Done.