Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30243

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 448

Length: 747
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Found at i:607 original size:3 final size:3

Alignment explanation


    Indices: 599--668  Score: 68
    Period size: 3  Copynumber: 23.3  Consensus size: 3

        589 AGCCAAGTCA

                                 *       *          *   *   *   *          
        599 ATG ATG ATG ATG ATG ACG ATG AGG ATG ATG GTG GTG GTG GTG ATG ATG
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG

                        *        *       
        647 ATG ATG ATG TTG ATG AAG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG A

        669 CCCAGAAGAG


Statistics
Matches: 57,  Mismatches: 10, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   57  1.00

ACGTcount: A:0.29, C:0.01, G:0.40, T:0.30


Consensus pattern (3 bp):   
ATG

Done.