Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31322

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 273

Length: 456
ACGTcount: A:0.34, C:0.24, G:0.26, T:0.16


Found at i:36 original size:15 final size:15

Alignment explanation


    Indices: 13--51  Score: 60
    Period size: 15  Copynumber: 2.6  Consensus size: 15

          3 GGCGCCGAAA

                           
         13 GCCGAGAAGAAGCCC
          1 GCCGAGAAGAAGCCC

              *           *
         28 GCTGAGAAGAAGCCT
          1 GCCGAGAAGAAGCCC

                     
         43 GCCGAGAAG
          1 GCCGAGAAG

         52 CCAACGGAGG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.33, C:0.26, G:0.36, T:0.05


Consensus pattern (15 bp):   
GCCGAGAAGAAGCCC
Done.