Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08757

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3383
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30


Found at i:3066 original size:18 final size:17

Alignment explanation


    Indices: 3045--3100  Score: 51
    Period size: 18  Copynumber: 3.1  Consensus size: 17

       3035 ATCTGAAGAT

                              
       3045 GATGATAATGATGATGAG
          1 GATGA-AATGATGATGAG

                  *           
       3063 GATGAGGATGATGATGA-
          1 GATGA-AATGATGATGAG

            *                  
       3080 AATCGAAATTGATGATGAG
          1 GAT-GAAA-TGATGATGAG

              
       3099 GA
          1 GA

       3101 ATCTGAGAGT


Statistics
Matches: 30,  Mismatches: 5, Indels: 5
        0.75            0.12        0.12

Matches are distributed among these distances:
  17    3  0.10
  18   26  0.87
  19    1  0.03

ACGTcount: A:0.39, C:0.02, G:0.34, T:0.25


Consensus pattern (17 bp):   
GATGAAATGATGATGAG
Done.