Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25203

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2208
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27


Found at i:200 original size:21 final size:21

Alignment explanation


    Indices: 176--222  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        166 GACAGCAATA

                          *      
        176 GCCTTGACATAGAAGGAAATG
          1 GCCTTGACATAGAAAGAAATG

                *     *     *    
        197 GCCTCGACATTGAAAGCAATG
          1 GCCTTGACATAGAAAGAAATG

                 
        218 GCCTT
          1 GCCTT

        223 CAGGATGATT


Statistics
Matches: 21,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21


Consensus pattern (21 bp):   
GCCTTGACATAGAAAGAAATG
Done.