Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00665

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 207

Length: 345
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30


Found at i:134 original size:27 final size:27

Alignment explanation


    Indices: 104--162  Score: 118
    Period size: 27  Copynumber: 2.2  Consensus size: 27

         94 AGTTCAGTTA

                                       
        104 ATGTCCCGAAAGGCCATTTTGCTGTTT
          1 ATGTCCCGAAAGGCCATTTTGCTGTTT

                                       
        131 ATGTCCCGAAAGGCCATTTTGCTGTTT
          1 ATGTCCCGAAAGGCCATTTTGCTGTTT

                 
        158 ATGTC
          1 ATGTC

        163 GGAGACGAAG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   32  1.00

ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37


Consensus pattern (27 bp):   
ATGTCCCGAAAGGCCATTTTGCTGTTT
Done.