Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40926

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1719
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26


Found at i:1045 original size:3 final size:3

Alignment explanation


    Indices: 1039--1071  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

       1029 ACAACCACAA

                                                       
       1039 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG

       1072 TTCTTGCATG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00


Consensus pattern (3 bp):   
CAG

Done.