Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11766

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1047
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32


Found at i:159 original size:24 final size:24

Alignment explanation


    Indices: 127--177  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        117 GTTCCCAAAC

                                    
        127 ACTTGTACCACCTTACCTTCTCTT
          1 ACTTGTACCACCTTACCTTCTCTT

                                    
        151 ACTTGTACCACCTTACCTTCTCTT
          1 ACTTGTACCACCTTACCTTCTCTT

               
        175 ACT
          1 ACT

        178 CCCTCAAAAC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.18, C:0.37, G:0.04, T:0.41


Consensus pattern (24 bp):   
ACTTGTACCACCTTACCTTCTCTT
Done.