Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: evm.model.Ga07G0210
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2271
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Found at i:499 original size:153 final size:153
Alignment explanation
Indices: 217--504 Score: 398
Period size: 153 Copynumber: 1.9 Consensus size: 153
207 GTTTTGGGGG
* * * ** *
217 TTTGATTTTGGGTTTCCCGAGAAACAAACGGAAAATTTCACCGAGTCACAAAGTGTTGTTCTTGG
1 TTTGATATTGGGTTTCCCGAGAAACAAACAGAAAACTTCACAAACTCACAAAGTGTTGTTCTTGG
* *
282 TGTCGATTTGGAGAGAAAGGAAAGAAGCCCAAGTGTTGAAATCGTTAGTCCTTCAAGTATAAAGA
66 TGTCGATTTGAAGAGAAAGGAAAGAAGCCCAAGTGTTGAAATCGTTAGTCCTTCAAGTAAAAAGA
347 CGAAAAGAAGCCCCAATGTCGTT
131 CGAAAAGAAGCCCCAATGTCGTT
* * ** *
370 TTTGATATTGTGTTTCCCGAGAAAGAAACAGAAAACTTCACAAACTCAGGAAGTGTTGTTTTTGG
1 TTTGATATTGGGTTTCCCGAGAAACAAACAGAAAACTTCACAAACTCACAAAGTGTTGTTCTTGG
* * **
435 TGTCGATTTGAAGGGAAAGGAAAGATGCCC-AGATGTTGAAATCGTTAGTTGTTCAAGTAAAAAG
66 TGTCGATTTGAAGAGAAAGGAAAGAAGCCCAAG-TGTTGAAATCGTTAGTCCTTCAAGTAAAAAG
*
499 AGGAAA
130 ACGAAA
505 TTTTCCGTTC
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
152 2 0.02
153 114 0.98
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (153 bp):
TTTGATATTGGGTTTCCCGAGAAACAAACAGAAAACTTCACAAACTCACAAAGTGTTGTTCTTGG
TGTCGATTTGAAGAGAAAGGAAAGAAGCCCAAGTGTTGAAATCGTTAGTCCTTCAAGTAAAAAGA
CGAAAAGAAGCCCCAATGTCGTT
Done.