Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Ga04G0178

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 330
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26


Found at i:287 original size:66 final size:66

Alignment explanation


    Indices: 194--323  Score: 199
    Period size: 66  Copynumber: 2.0  Consensus size: 66

        184 AAAATTCCCA

                          *       *               *             *            
        194 AGTTACCAAAGCCAGAATTGCTTAAAGTTCCTGAGATGTCCAAGCCAAAATTGCCCAAAGCTCCT
          1 AGTTACCAAAGCCAAAATTGCTCAAAGTTCCTGAGATGCCCAAGCCAAAATTCCCCAAAGCTCCT

             
        259 G
         66 G

                                                *                            
        260 AGTTACCAAAGCCAAAATTG-TCCAAAGTTCCTGAGGTGCCCAAGCCAAAATTCCCCAAAGCTCC
          1 AGTTACCAAAGCCAAAATTGCT-CAAAGTTCCTGAGATGCCCAAGCCAAAATTCCCCAAAGCTCC

        324 CAAGTAA


Statistics
Matches: 58,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  65    1  0.02
  66   57  0.98

ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21


Consensus pattern (66 bp):   
AGTTACCAAAGCCAAAATTGCTCAAAGTTCCTGAGATGCCCAAGCCAAAATTCCCCAAAGCTCCT
G

Found at i:318 original size:33 final size:33

Alignment explanation


    Indices: 202--319  Score: 137
    Period size: 33  Copynumber: 3.6  Consensus size: 33

        192 CAAGTTACCA

                  *      **               *  
        202 AAGCCAGAATTGCTTAAAGTTCCTGAGATGTCC
          1 AAGCCAAAATTGCCCAAAGTTCCTGAGATGCCC

                               *       * *  *
        235 AAGCCAAAATTGCCCAAAGCTCCTGAGTTACCA
          1 AAGCCAAAATTGCCCAAAGTTCCTGAGATGCCC

                        *              *     
        268 AAGCCAAAATTGTCCAAAGTTCCTGAGGTGCCC
          1 AAGCCAAAATTGCCCAAAGTTCCTGAGATGCCC

                       *       
        301 AAGCCAAAATTCCCCAAAG
          1 AAGCCAAAATTGCCCAAAG

        320 CTCCCAAGTA


Statistics
Matches: 70,  Mismatches: 15, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  33   70  1.00

ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20


Consensus pattern (33 bp):   
AAGCCAAAATTGCCCAAAGTTCCTGAGATGCCC
Done.