Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Ga10G0477

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 572

Length: 954
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25


Found at i:264 original size:57 final size:58

Alignment explanation


    Indices: 157--307  Score: 179
    Period size: 57  Copynumber: 2.7  Consensus size: 58

        147 TACTGGAGCC

                                                         *              
        157 ACTGTTGGCAACCCTGGTGTGGCTGCAGGTGCAGCCACTGGTCCCGTTCCCACAGGAACT
          1 ACTGTTGGCAACCCTGGTGTGGCTGC--GTGCAGCCACTGGTCCCATTCCCACAGGAACT

                    *                                               * *
        217 ACTGTTGGGAACCCTGGTGTAGG-TGC-TGCAGCCACTGGTCCCATTCCCACAGGACCC
          1 ACTGTTGGCAACCCTGGTGT-GGCTGCGTGCAGCCACTGGTCCCATTCCCACAGGAACT

             *     *                              
        274 AATGTTGCCAACCCT-G-GT-GCTG-GTGCAGCCACTG
          1 ACTGTTGGCAACCCTGGTGTGGCTGCGTGCAGCCACTG

        308 CTGACCACCC


Statistics
Matches: 81,  Mismatches: 7, Indels: 12
        0.81            0.07        0.12

Matches are distributed among these distances:
  53    1  0.01
  54   13  0.16
  55    2  0.02
  56    1  0.01
  57   40  0.49
  60   22  0.27
  61    2  0.02

ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22


Consensus pattern (58 bp):   
ACTGTTGGCAACCCTGGTGTGGCTGCGTGCAGCCACTGGTCCCATTCCCACAGGAACT
Done.