Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: evm.model.Ga07G2427 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 462 Length: 771 ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23 Found at i:119 original size:3 final size:3 Alignment explanation
Indices: 111--142 Score: 64 Period size: 3 Copynumber: 10.7 Consensus size: 3 101 TAGGGTTGCC 111 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG 1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG 143 ACGGTGAAGT Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 29 1.00 ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34 Consensus pattern (3 bp): TGG Done.