Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01388.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2877
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38


Found at i:2175 original size:17 final size:17

Alignment explanation


    Indices: 2153--2186  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       2143 AACTTTGTAC

                             
       2153 TTCAAATATGATAATTT
          1 TTCAAATATGATAATTT

                             
       2170 TTCAAATATGATAATTT
          1 TTCAAATATGATAATTT

       2187 AAATTTAAGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47


Consensus pattern (17 bp):   
TTCAAATATGATAATTT
Done.