Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01399.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 665

Length: 1109
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27


Found at i:403 original size:33 final size:33

Alignment explanation


    Indices: 365--474  Score: 80
    Period size: 33  Copynumber: 3.2  Consensus size: 33

        355 CAACGAAGCA

                                             
        365 AGAGTGACACACGCCAGCACGGAGGACTTCAAG
          1 AGAGTGACACACGCCAGCACGGAGGACTTCAAG

                  **   *   *           *   **     
        398 AGAGTGTTA-ATGCCGGCACTCTTGG-TGACAACGAAG
          1 AGAGTGACACACGCCAGCA--C--GGAGGACTTC-AAG

                                               
        434 CAAGAGTGACACACGCCAGCACGGAGGACTTCAAG
          1 --AGAGTGACACACGCCAGCACGGAGGACTTCAAG

                  
        469 AGAGTG
          1 AGAGTG

        475 TTTGATATCA


Statistics
Matches: 54,  Mismatches: 14, Indels: 18
        0.63            0.16        0.21

Matches are distributed among these distances:
  32    7  0.13
  33   13  0.24
  34    1  0.02
  35    9  0.17
  36    9  0.17
  37    1  0.02
  38    7  0.13
  39    7  0.13

ACGTcount: A:0.32, C:0.24, G:0.31, T:0.14


Consensus pattern (33 bp):   
AGAGTGACACACGCCAGCACGGAGGACTTCAAG

Found at i:451 original size:71 final size:71

Alignment explanation


    Indices: 335--476  Score: 284
    Period size: 71  Copynumber: 2.0  Consensus size: 71

        325 CATGTTCAAC

                                                                             
        335 AATGCCGGCACTCTTGGTGACAACGAAGCAAGAGTGACACACGCCAGCACGGAGGACTTCAAGAG
          1 AATGCCGGCACTCTTGGTGACAACGAAGCAAGAGTGACACACGCCAGCACGGAGGACTTCAAGAG

                  
        400 AGTGTT
         66 AGTGTT

                                                                             
        406 AATGCCGGCACTCTTGGTGACAACGAAGCAAGAGTGACACACGCCAGCACGGAGGACTTCAAGAG
          1 AATGCCGGCACTCTTGGTGACAACGAAGCAAGAGTGACACACGCCAGCACGGAGGACTTCAAGAG

                  
        471 AGTGTT
         66 AGTGTT

        477 TGATATCAAT


Statistics
Matches: 71,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  71   71  1.00

ACGTcount: A:0.31, C:0.24, G:0.30, T:0.15


Consensus pattern (71 bp):   
AATGCCGGCACTCTTGGTGACAACGAAGCAAGAGTGACACACGCCAGCACGGAGGACTTCAAGAG
AGTGTT
Done.