Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01423.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1275
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:965 original size:20 final size:20

Alignment explanation


    Indices: 926--977  Score: 59
    Period size: 20  Copynumber: 2.5  Consensus size: 20

        916 GTTCATTCGG

                     *     *    *
        926 GGGAAGGAAAAAAGGGAAATT
          1 GGGAA-GAAGAAAGGAAAATC

                                
        947 GGGAAGAAGAAAGGAAAATC
          1 GGGAAGAAGAAAGGAAAATC

                 *     
        967 GGGAAAAAGAA
          1 GGGAAGAAGAA

        978 GAAGAAAAAT


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  20   22  0.81
  21    5  0.19

ACGTcount: A:0.56, C:0.02, G:0.37, T:0.06


Consensus pattern (20 bp):   
GGGAAGAAGAAAGGAAAATC
Done.