Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01434.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 293

Length: 489
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35


Found at i:425 original size:22 final size:23

Alignment explanation


    Indices: 385--427  Score: 61
    Period size: 22  Copynumber: 1.9  Consensus size: 23

        375 TATGCGATTG

                          *        
        385 TTTGTCAGTTCCTAGATGGTTCT
          1 TTTGTCAGTTCCTACATGGTTCT

                      *          
        408 TTTGT-AGTTTCTACATGGTT
          1 TTTGTCAGTTCCTACATGGTT

        428 GAATTAGAAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  22   13  0.72
  23    5  0.28

ACGTcount: A:0.14, C:0.14, G:0.21, T:0.51


Consensus pattern (23 bp):   
TTTGTCAGTTCCTACATGGTTCT
Done.