Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01437.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 906
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:492 original size:6 final size:6

Alignment explanation


    Indices: 483--534  Score: 77
    Period size: 6  Copynumber: 8.7  Consensus size: 6

        473 ACAGAAACCA

                                          *         *      *       
        483 CAACAG CAACAG CAACAG CAACAG CAGCAG CAACAA CAACAA CAACAG
          1 CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG

                
        531 CAAC
          1 CAAC

        535 CGACTCGGTG


Statistics
Matches: 42,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   42  1.00

ACGTcount: A:0.52, C:0.35, G:0.13, T:0.00


Consensus pattern (6 bp):   
CAACAG

Done.