Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01437.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 591

Length: 985
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:571 original size:6 final size:6

Alignment explanation


    Indices: 562--613  Score: 77
    Period size: 6  Copynumber: 8.7  Consensus size: 6

        552 ACAGAAACCA

                                          *         *      *       
        562 CAACAG CAACAG CAACAG CAACAG CAGCAG CAACAA CAACAA CAACAG
          1 CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG

                
        610 CAAC
          1 CAAC

        614 CGACTCGGTG


Statistics
Matches: 42,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   42  1.00

ACGTcount: A:0.52, C:0.35, G:0.13, T:0.00


Consensus pattern (6 bp):   
CAACAG

Done.