Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01452.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 354

Length: 591
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38


Found at i:34 original size:3 final size:3

Alignment explanation


    Indices: 26--74  Score: 89
    Period size: 3  Copynumber: 16.3  Consensus size: 3

         16 CAACCTATTC

                                                                 *         
         26 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

             
         74 T
          1 T

         75 AAAACAATGA


Statistics
Matches: 44,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   44  1.00

ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69


Consensus pattern (3 bp):   
TCT

Done.