Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01473.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5236
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:3646 original size:43 final size:43

Alignment explanation


    Indices: 3598--3685  Score: 176
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       3588 GCTAAAGGTC

                                                       
       3598 TAGTGTCTTTCAAGTTTTAATTGACATATAGTTTATTTATGGT
          1 TAGTGTCTTTCAAGTTTTAATTGACATATAGTTTATTTATGGT

                                                       
       3641 TAGTGTCTTTCAAGTTTTAATTGACATATAGTTTATTTATGGT
          1 TAGTGTCTTTCAAGTTTTAATTGACATATAGTTTATTTATGGT

              
       3684 TA
          1 TA

       3686 ACATTGGAGA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   45  1.00

ACGTcount: A:0.26, C:0.07, G:0.16, T:0.51


Consensus pattern (43 bp):   
TAGTGTCTTTCAAGTTTTAATTGACATATAGTTTATTTATGGT
Done.