Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01479.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 896

Length: 1494
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36


Found at i:541 original size:28 final size:28

Alignment explanation


    Indices: 509--568  Score: 111
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        499 ATCAATTCGA

                                        
        509 AAATCGATTTAGTTTGGAAAGCCATACT
          1 AAATCGATTTAGTTTGGAAAGCCATACT

                                 *      
        537 AAATCGATTTAGTTTGGAAAGTCATACT
          1 AAATCGATTTAGTTTGGAAAGCCATACT

                
        565 AAAT
          1 AAAT

        569 AATAATGTTA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   31  1.00

ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33


Consensus pattern (28 bp):   
AAATCGATTTAGTTTGGAAAGCCATACT
Done.