Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01481.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 573

Length: 956
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26


Found at i:57 original size:24 final size:25

Alignment explanation


    Indices: 30--76  Score: 60
    Period size: 25  Copynumber: 1.9  Consensus size: 25

         20 CAAAGCAAAG

                      *    *         
         30 GAAA-AAAAATAAAGTAAAAACAGA
          1 GAAATAAAAAGAAAGAAAAAACAGA

                 *                 
         54 GAAATCAAAAGAAAGAAAAAACA
          1 GAAATAAAAAGAAAGAAAAAACA

         77 ATGGCGGTTC


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  24    4  0.21
  25   15  0.79

ACGTcount: A:0.74, C:0.06, G:0.13, T:0.06


Consensus pattern (25 bp):   
GAAATAAAAAGAAAGAAAAAACAGA
Done.