Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00456.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3288
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:2338 original size:35 final size:35

Alignment explanation


    Indices: 2292--2363  Score: 144
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       2282 AAGGTAACCC

                                               
       2292 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
          1 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT

                                               
       2327 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
          1 ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT

              
       2362 AT
          1 AT

       2364 CTTCGGCTTG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   37  1.00

ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35


Consensus pattern (35 bp):   
ATAAAGCTACTAGTTTCCAGAAATGGTTTTGGACT
Done.