Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01511.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 787

Length: 1313
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31


Found at i:63 original size:5 final size:5

Alignment explanation


    Indices: 55--82  Score: 56
    Period size: 5  Copynumber: 5.6  Consensus size: 5

         45 AGAAATCAAA

                                             
         55 TTCTT TTCTT TTCTT TTCTT TTCTT TTC
          1 TTCTT TTCTT TTCTT TTCTT TTCTT TTC

         83 ATCCAAACAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79


Consensus pattern (5 bp):   
TTCTT

Done.