Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01533.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 985

Length: 1643
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:1528 original size:32 final size:32

Alignment explanation


    Indices: 1487--1550  Score: 128
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1477 CTTCCAACTG

                                            
       1487 TTGATAGATGCTGGTATGTTATTAAATTGTGT
          1 TTGATAGATGCTGGTATGTTATTAAATTGTGT

                                            
       1519 TTGATAGATGCTGGTATGTTATTAAATTGTGT
          1 TTGATAGATGCTGGTATGTTATTAAATTGTGT

       1551 CATCTTTTAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.25, C:0.03, G:0.25, T:0.47


Consensus pattern (32 bp):   
TTGATAGATGCTGGTATGTTATTAAATTGTGT
Done.