Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01534.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4051
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28


Found at i:596 original size:16 final size:16

Alignment explanation


    Indices: 575--612  Score: 67
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        565 TAATCAAAAC

                         *  
        575 TATATATATATATGTG
          1 TATATATATATATATG

                            
        591 TATATATATATATATG
          1 TATATATATATATATG

                  
        607 TATATA
          1 TATATA

        613 CTAGGTCCTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50


Consensus pattern (16 bp):   
TATATATATATATATG

Found at i:598 original size:18 final size:18

Alignment explanation


    Indices: 575--612  Score: 67
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        565 TAATCAAAAC

                           *  
        575 TATATATATATATGTGTA
          1 TATATATATATATGTATA

                              
        593 TATATATATATATGTATA
          1 TATATATATATATGTATA

              
        611 TA
          1 TA

        613 CTAGGTCCTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50


Consensus pattern (18 bp):   
TATATATATATATGTATA

Found at i:1046 original size:22 final size:22

Alignment explanation


    Indices: 1004--1046  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        994 TATTGGTTAA

                            *     
       1004 AATATTTTTATTATTTTATTAT
          1 AATATTTTTATTATTTAATTAT

                      *           
       1026 AATATATTTTGTTA-TTAATTA
          1 AATAT-TTTTATTATTTAATTA

       1047 ATAGTTAAAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  22   11  0.61
  23    7  0.39

ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63


Consensus pattern (22 bp):   
AATATTTTTATTATTTAATTAT
Done.