Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01537.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:823 original size:2 final size:2

Alignment explanation


    Indices: 807--857  Score: 68
    Period size: 2  Copynumber: 26.0  Consensus size: 2

        797 ACATCTTAAG

                      *                            *              *       
        807 AT AT AT AC AT A- AT AT AT AT AT AT AT GT AT AT AT AT GT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                          
        848 AT AT AT AT AT
          1 AT AT AT AT AT

        858 GTATGTATGT


Statistics
Matches: 42,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   41  0.98

ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47


Consensus pattern (2 bp):   
AT

Found at i:836 original size:10 final size:10

Alignment explanation


    Indices: 818--865  Score: 69
    Period size: 10  Copynumber: 4.8  Consensus size: 10

        808 TATATACATA

                *     
        818 ATATATATAT
          1 ATATGTATAT

                      
        828 ATATGTATAT
          1 ATATGTATAT

                      
        838 ATATGTATAT
          1 ATATGTATAT

                *     
        848 ATATATATAT
          1 ATATGTATAT

            *       
        858 GTATGTAT
          1 ATATGTAT

        866 GTATGAAAAT


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  10   34  1.00

ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50


Consensus pattern (10 bp):   
ATATGTATAT

Found at i:870 original size:8 final size:8

Alignment explanation


    Indices: 818--869  Score: 59
    Period size: 8  Copynumber: 6.2  Consensus size: 8

        808 TATATACATA

                  * 
        818 ATATATAT
          1 ATATATGT

                      
        826 ATATATGTAT
          1 ATATATG--T

                    
        836 ATATATGT
          1 ATATATGT

                  * 
        844 ATATATAT
          1 ATATATGT

                    
        852 ATATATGT
          1 ATATATGT

              *     
        860 ATGTATGT
          1 ATATATGT

              
        868 AT
          1 AT

        870 GAAAATAAGC


Statistics
Matches: 38,  Mismatches: 4, Indels: 4
        0.83            0.09        0.09

Matches are distributed among these distances:
   8   30  0.79
  10    8  0.21

ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50


Consensus pattern (8 bp):   
ATATATGT
Done.