Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01537.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1255
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:1049 original size:2 final size:2

Alignment explanation


    Indices: 1033--1083  Score: 68
    Period size: 2  Copynumber: 26.0  Consensus size: 2

       1023 ACATCTTAAG

                      *                            *              *       
       1033 AT AT AT AC AT A- AT AT AT AT AT AT AT GT AT AT AT AT GT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                          
       1074 AT AT AT AT AT
          1 AT AT AT AT AT

       1084 GTATGTATGT


Statistics
Matches: 42,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   41  0.98

ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47


Consensus pattern (2 bp):   
AT

Found at i:1062 original size:10 final size:10

Alignment explanation


    Indices: 1044--1091  Score: 69
    Period size: 10  Copynumber: 4.8  Consensus size: 10

       1034 TATATACATA

                *     
       1044 ATATATATAT
          1 ATATGTATAT

                      
       1054 ATATGTATAT
          1 ATATGTATAT

                      
       1064 ATATGTATAT
          1 ATATGTATAT

                *     
       1074 ATATATATAT
          1 ATATGTATAT

            *       
       1084 GTATGTAT
          1 ATATGTAT

       1092 GTATGAAAAT


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  10   34  1.00

ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50


Consensus pattern (10 bp):   
ATATGTATAT

Found at i:1096 original size:8 final size:8

Alignment explanation


    Indices: 1044--1095  Score: 59
    Period size: 8  Copynumber: 6.2  Consensus size: 8

       1034 TATATACATA

                  * 
       1044 ATATATAT
          1 ATATATGT

                      
       1052 ATATATGTAT
          1 ATATATG--T

                    
       1062 ATATATGT
          1 ATATATGT

                  * 
       1070 ATATATAT
          1 ATATATGT

                    
       1078 ATATATGT
          1 ATATATGT

              *     
       1086 ATGTATGT
          1 ATATATGT

              
       1094 AT
          1 AT

       1096 GAAAATAAGC


Statistics
Matches: 38,  Mismatches: 4, Indels: 4
        0.83            0.09        0.09

Matches are distributed among these distances:
   8   30  0.79
  10    8  0.21

ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50


Consensus pattern (8 bp):   
ATATATGT
Done.