Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01547.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3344
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31


Found at i:506 original size:55 final size:55

Alignment explanation


    Indices: 443--554  Score: 215
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        433 GAGGCAAAAG

                                                                   
        443 AAAGTTTTTTTCTTCTTCTTTTTCTTTTTAAAAATTTTCGTTCCTTTATTATATC
          1 AAAGTTTTTTTCTTCTTCTTTTTCTTTTTAAAAATTTTCGTTCCTTTATTATATC

                                         *                         
        498 AAAGTTTTTTTCTTCTTCTTTTTCTTTTTTAAAATTTTCGTTCCTTTATTATATC
          1 AAAGTTTTTTTCTTCTTCTTTTTCTTTTTAAAAATTTTCGTTCCTTTATTATATC

              
        553 AA
          1 AA

        555 GATTCCATTT


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   56  1.00

ACGTcount: A:0.21, C:0.14, G:0.04, T:0.62


Consensus pattern (55 bp):   
AAAGTTTTTTTCTTCTTCTTTTTCTTTTTAAAAATTTTCGTTCCTTTATTATATC
Done.