Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01580.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1908
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25


Found at i:1047 original size:3 final size:3

Alignment explanation


    Indices: 1039--1077  Score: 51
    Period size: 3  Copynumber: 13.0  Consensus size: 3

       1029 CGCAGCAACT

                            *   *   *                          
       1039 GCA GCA GCA GCA ACA ACA CCA GCA GCA GCA GCA GCA GCA
          1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA

       1078 AAGGCAAAAA


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.38, C:0.36, G:0.26, T:0.00


Consensus pattern (3 bp):   
GCA

Found at i:1050 original size:15 final size:15

Alignment explanation


    Indices: 1030--1077  Score: 60
    Period size: 15  Copynumber: 3.2  Consensus size: 15

       1020 AGCCACAAAC

                    *      
       1030 GCAGCAACTGCAGCA
          1 GCAGCAACAGCAGCA

                     *  *  
       1045 GCAGCAACAACACCA
          1 GCAGCAACAGCAGCA

                  *        
       1060 GCAGCAGCAGCAGCA
          1 GCAGCAACAGCAGCA

               
       1075 GCA
          1 GCA

       1078 AAGGCAAAAA


Statistics
Matches: 27,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.38, C:0.35, G:0.25, T:0.02


Consensus pattern (15 bp):   
GCAGCAACAGCAGCA

Done.