Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00463.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5005
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:2354 original size:18 final size:18

Alignment explanation


    Indices: 2331--2379  Score: 89
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       2321 TTTCTTTTTA

                  *           
       2331 TCTTCAATTTATTTTCAT
          1 TCTTCAGTTTATTTTCAT

                              
       2349 TCTTCAGTTTATTTTCAT
          1 TCTTCAGTTTATTTTCAT

                         
       2367 TCTTCAGTTTATT
          1 TCTTCAGTTTATT

       2380 ACTTTATTTG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  18   30  1.00

ACGTcount: A:0.18, C:0.16, G:0.04, T:0.61


Consensus pattern (18 bp):   
TCTTCAGTTTATTTTCAT
Done.