Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01597.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1964
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29


Found at i:88 original size:24 final size:24

Alignment explanation


    Indices: 55--106  Score: 70
    Period size: 26  Copynumber: 2.1  Consensus size: 24

         45 TTTATTATTA

                                 *  
         55 TTTTCATTTTC-CTCTGTTTTTTC
          1 TTTTCATTTTCTCTCTGTTTTCTC

                                      
         78 TTTTCTATTTTCTTCTCTGTTTTCTC
          1 TTTTC-ATTTTC-TCTCTGTTTTCTC

               
        104 TTT
          1 TTT

        107 ATTGGCCACA


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  23    5  0.20
  24    6  0.24
  26   14  0.56

ACGTcount: A:0.04, C:0.21, G:0.04, T:0.71


Consensus pattern (24 bp):   
TTTTCATTTTCTCTCTGTTTTCTC

Done.