Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01603.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2961
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32


Found at i:2344 original size:16 final size:18

Alignment explanation


    Indices: 2323--2355  Score: 52
    Period size: 16  Copynumber: 1.9  Consensus size: 18

       2313 ATAGGTTTTC

                              
       2323 AATTT-ATTTT-TTTTAA
          1 AATTTAATTTTCTTTTAA

                             
       2339 AATTTAATTTTCTTTTA
          1 AATTTAATTTTCTTTTA

       2356 CGCCCATAGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    5  0.33
  17    5  0.33
  18    5  0.33

ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67


Consensus pattern (18 bp):   
AATTTAATTTTCTTTTAA
Done.