Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01605.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3374
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35


Found at i:1206 original size:14 final size:14

Alignment explanation


    Indices: 1187--1213  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1177 GGTACGTCGT

                          
       1187 AAGGTATTTTTAAC
          1 AAGGTATTTTTAAC

                         
       1201 AAGGTATTTTTAA
          1 AAGGTATTTTTAA

       1214 ATTATGGATA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.37, C:0.04, G:0.15, T:0.44


Consensus pattern (14 bp):   
AAGGTATTTTTAAC

Found at i:2185 original size:39 final size:39

Alignment explanation


    Indices: 2142--2265  Score: 212
    Period size: 39  Copynumber: 3.2  Consensus size: 39

       2132 CGAAATCTAG

                    *               *              
       2142 CTGAAGCATATAAGTGCTAAACGGCAGCCCGGAGGCTAA
          1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA

                                                   
       2181 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA
          1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA

              *                            *       
       2220 CTAAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAA
          1 CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA

                   
       2259 CTGAAGC
          1 CTGAAGC

       2266 TCATCAGAGC


Statistics
Matches: 80,  Mismatches: 5, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  39   80  1.00

ACGTcount: A:0.36, C:0.23, G:0.27, T:0.14


Consensus pattern (39 bp):   
CTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAA
Done.