Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01606.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4943
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33


Found at i:2421 original size:46 final size:45

Alignment explanation


    Indices: 2319--2488  Score: 191
    Period size: 46  Copynumber: 3.7  Consensus size: 45

       2309 GAGATTTGTG

                               *  *              * *    *  
       2319 TGCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGACGA
          1 TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA

             *  *                                         
       2366 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
          1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA

                      *                   *                
       2412 TAGCCAGTGTCAGACATGTCTGGGACATGCGTCGG-CTACGAGATG-
          1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA

               *                            
       2457 TGCTAGTGTAAGACATGTCTGGGACATGCATC
          1 TGCCAGTGTAAGACATGTCTGGGACATGCATC

       2489 AGCACGGTTA


Statistics
Matches: 106,  Mismatches: 14, Indels: 8
        0.83            0.11        0.06

Matches are distributed among these distances:
  44   28  0.26
  45    3  0.03
  46   52  0.49
  47   12  0.11
  48   11  0.10

ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23


Consensus pattern (45 bp):   
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA

Found at i:2480 original size:44 final size:44

Alignment explanation


    Indices: 2368--2528  Score: 184
    Period size: 46  Copynumber: 3.6  Consensus size: 44

       2358 TGAGACGAGG

                                                          
       2368 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAT
          1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATG-T

               *     *                   *               
       2413 AGCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGT
          1 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT

                                           *          *    
       2458 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-ACGGTTACATGT
          1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-G--AGATGT

                          *           
       2504 G-TCAGTGTAAGACCTGTCTGGGACA
          1 GCT-AGTGTAAGACATGTCTGGGACA

       2529 CGGCATCGAC


Statistics
Matches: 101,  Mismatches: 9, Indels: 10
        0.84            0.08        0.08

Matches are distributed among these distances:
  43    2  0.02
  44   31  0.31
  45    4  0.04
  46   64  0.63

ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24


Consensus pattern (44 bp):   
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT
Done.