Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01612.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1992
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35


Found at i:1850 original size:25 final size:25

Alignment explanation


    Indices: 1822--1909  Score: 79
    Period size: 25  Copynumber: 3.5  Consensus size: 25

       1812 CCCCAAAAAT

                                     
       1822 AATTAAACTCATTTACCAAGATCTC
          1 AATTAAACTCATTTACCAAGATCTC

                 *       *  *****     
       1847 AATTATACTCACTGTAATTTCATCTC
          1 AATTAAACTCA-TTTACCAAGATCTC

               *                     
       1873 -ATCAAACTCATTTACCAAGATCTC
          1 AATTAAACTCATTTACCAAGATCTC

                 *       
       1897 AATTATACTCATT
          1 AATTAAACTCATT

       1910 GTAATTTCAT


Statistics
Matches: 44,  Mismatches: 17, Indels: 4
        0.68            0.26        0.06

Matches are distributed among these distances:
  24    8  0.18
  25   28  0.64
  26    8  0.18

ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36


Consensus pattern (25 bp):   
AATTAAACTCATTTACCAAGATCTC

Found at i:1886 original size:50 final size:50

Alignment explanation


    Indices: 1826--1926  Score: 193
    Period size: 50  Copynumber: 2.0  Consensus size: 50

       1816 AAAAATAATT

                                                              
       1826 AAACTCATTTACCAAGATCTCAATTATACTCACTGTAATTTCATCTCATC
          1 AAACTCATTTACCAAGATCTCAATTATACTCACTGTAATTTCATCTCATC

                                            *                 
       1876 AAACTCATTTACCAAGATCTCAATTATACTCATTGTAATTTCATCTCATC
          1 AAACTCATTTACCAAGATCTCAATTATACTCACTGTAATTTCATCTCATC

             
       1926 A
          1 A

       1927 TCTGTCAATG


Statistics
Matches: 50,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  50   50  1.00

ACGTcount: A:0.35, C:0.25, G:0.04, T:0.37


Consensus pattern (50 bp):   
AAACTCATTTACCAAGATCTCAATTATACTCACTGTAATTTCATCTCATC
Done.