Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01620.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23


Found at i:200 original size:39 final size:39

Alignment explanation


    Indices: 146--237  Score: 148
    Period size: 39  Copynumber: 2.4  Consensus size: 39

        136 ACAACGTTAA

                                   *         *     
        146 CAACATCTTCAACATCACCGACAGTGTCAGCAATGCCGG
          1 CAACATCTTCAACATCACCGACAATGTCAGCAACGCCGG

                              *                    
        185 CAACATCTTCAACATCACTGACAATGTCAGCAACGCCGG
          1 CAACATCTTCAACATCACCGACAATGTCAGCAACGCCGG

                    *     
        224 CAACATCTCCAACA
          1 CAACATCTTCAACA

        238 CCAGCAACAC


Statistics
Matches: 49,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  39   49  1.00

ACGTcount: A:0.34, C:0.35, G:0.14, T:0.17


Consensus pattern (39 bp):   
CAACATCTTCAACATCACCGACAATGTCAGCAACGCCGG
Done.