Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00009.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3942
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:3599 original size:6 final size:6

Alignment explanation


    Indices: 3588--3622  Score: 70
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       3578 CTAAGATACG

                                                    
       3588 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
          1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG

       3623 GGAAGCTTTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17


Consensus pattern (6 bp):   
ATCAGA

Done.