Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00024.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2107
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28


Found at i:780 original size:36 final size:36

Alignment explanation


    Indices: 728--798  Score: 115
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        718 AGCTTCTGTG

                  *                             
        728 TCATCTTATACAAGACCATCCTCTCCCATTACTCGA
          1 TCATCTAATACAAGACCATCCTCTCCCATTACTCGA

                       *              *        
        764 TCATCTAATACCAGACCATCCTCTCCTATTACTCG
          1 TCATCTAATACAAGACCATCCTCTCCCATTACTCG

        799 CTCGCCATCT


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  36   32  1.00

ACGTcount: A:0.27, C:0.37, G:0.06, T:0.31


Consensus pattern (36 bp):   
TCATCTAATACAAGACCATCCTCTCCCATTACTCGA
Done.