Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00030.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 986

Length: 1644
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:581 original size:119 final size:119

Alignment explanation


    Indices: 370--607  Score: 476
    Period size: 119  Copynumber: 2.0  Consensus size: 119

        360 AAAATTGTTA

                                                                             
        370 TTGAAGAGCCTTCCAAGAGTGAGAAAAATGGCACTGCTAGTGCTGTCAAGGTTGAGAAAATTCAG
          1 TTGAAGAGCCTTCCAAGAGTGAGAAAAATGGCACTGCTAGTGCTGTCAAGGTTGAGAAAATTCAG

                                                                  
        435 AGGTTGAGTGCTCTGAAGGCTGAAAAGATCTCCAGTACGGAAACCATAAAGGTT
         66 AGGTTGAGTGCTCTGAAGGCTGAAAAGATCTCCAGTACGGAAACCATAAAGGTT

                                                                             
        489 TTGAAGAGCCTTCCAAGAGTGAGAAAAATGGCACTGCTAGTGCTGTCAAGGTTGAGAAAATTCAG
          1 TTGAAGAGCCTTCCAAGAGTGAGAAAAATGGCACTGCTAGTGCTGTCAAGGTTGAGAAAATTCAG

                                                                  
        554 AGGTTGAGTGCTCTGAAGGCTGAAAAGATCTCCAGTACGGAAACCATAAAGGTT
         66 AGGTTGAGTGCTCTGAAGGCTGAAAAGATCTCCAGTACGGAAACCATAAAGGTT

        608 AAGGAAGCGC


Statistics
Matches: 119,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 119  119  1.00

ACGTcount: A:0.34, C:0.16, G:0.28, T:0.23


Consensus pattern (119 bp):   
TTGAAGAGCCTTCCAAGAGTGAGAAAAATGGCACTGCTAGTGCTGTCAAGGTTGAGAAAATTCAG
AGGTTGAGTGCTCTGAAGGCTGAAAAGATCTCCAGTACGGAAACCATAAAGGTT
Done.