Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00055.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3010
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:2974 original size:12 final size:12

Alignment explanation


    Indices: 2954--2986  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       2944 CAATGATACA

                *       
       2954 TATGTATGTTTG
          1 TATGCATGTTTG

                        
       2966 TATGCATGTTTG
          1 TATGCATGTTTG

                     
       2978 TATGCATGT
          1 TATGCATGT

       2987 ATATATGTAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.18, C:0.06, G:0.24, T:0.52


Consensus pattern (12 bp):   
TATGCATGTTTG
Done.