Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00063.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2166
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32


Found at i:1591 original size:61 final size:61

Alignment explanation


    Indices: 1516--1697  Score: 240
    Period size: 68  Copynumber: 2.9  Consensus size: 61

       1506 TCAATGGTTG

                                           *                             
       1516 CAATGTGGGCAAACAAGTGGTTGTAGTTGCCTCGCAATGATTTTAATAAAGGTTTTGGTCA
          1 CAATGTGGGCAAACAAGTGGTTGTAGTTGCCCCGCAATGATTTTAATAAAGGTTTTGGTCA

                                                                             
       1577 CAATGTAGGG-AAACAAGTGGTTATTGGTTGTAGTTGCCCCGCAATGATTTTAATAAAGGTTTTG
          1 CAATGT-GGGCAAACAA---G----TGGTTGTAGTTGCCCCGCAATGATTTTAATAAAGGTTTTG

               *
       1641 GTCG
         58 GTCA

               **                                *               
       1645 CAACATGGGCAAACAAGTGGTTGTAGTTGCCCCGCAAAGATTTTAATAAAGGT
          1 CAATGTGGGCAAACAAGTGGTTGTAGTTGCCCCGCAATGATTTTAATAAAGGT

       1698 GTTTTCTCGA


Statistics
Matches: 107,  Mismatches: 5, Indels: 18
        0.82            0.04        0.14

Matches are distributed among these distances:
  61   47  0.44
  62    3  0.03
  64    1  0.01
  65    1  0.01
  67    3  0.03
  68   52  0.49

ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31


Consensus pattern (61 bp):   
CAATGTGGGCAAACAAGTGGTTGTAGTTGCCCCGCAATGATTTTAATAAAGGTTTTGGTCA

Done.