Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00068.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29


Found at i:15 original size:3 final size:3

Alignment explanation


    Indices: 8--82  Score: 86
    Period size: 3  Copynumber: 26.0  Consensus size: 3

          1 GGGCAAT

                          *                  *                          
          8 AGA AGA AGA A-T AGA AGA AGA AGA ATA AG- AGA AGA A-A CAG- AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA

                                 *                     
         50 AGA AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

         83 GGAGGAGGAG


Statistics
Matches: 61,  Mismatches: 6, Indels: 10
        0.79            0.08        0.13

Matches are distributed among these distances:
   2    6  0.10
   3   55  0.90

ACGTcount: A:0.67, C:0.01, G:0.29, T:0.03


Consensus pattern (3 bp):   
AGA

Done.