Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00068.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1047
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30


Found at i:15 original size:3 final size:3

Alignment explanation


    Indices: 8--71  Score: 80
    Period size: 3  Copynumber: 22.0  Consensus size: 3

          1 GAAGAAT

                             *                                          
          8 AGA AGA AGA AGA ATA AG- AGA AGA A-A CAG- AGA AGA AGA AGA AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA

                 *                     
         51 AGA AAA AGA AGA AGA AGA AGA
          1 AGA AGA AGA AGA AGA AGA AGA

         72 GGAGGAGGAG


Statistics
Matches: 53,  Mismatches: 4, Indels: 8
        0.82            0.06        0.12

Matches are distributed among these distances:
   2    5  0.09
   3   48  0.91

ACGTcount: A:0.67, C:0.02, G:0.30, T:0.02


Consensus pattern (3 bp):   
AGA

Done.