Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00068.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 623

Length: 1039
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.30


Found at i:8 original size:3 final size:3

Alignment explanation


    Indices: 1--63  Score: 78
    Period size: 3  Copynumber: 21.7  Consensus size: 3

                            *                                           
          1 GAA GAA GAA GAA TAA G-A GAA GAA -ACA G-A GAA GAA GAA GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GA-A GAA GAA GAA GAA GAA GAA

                *                     
         44 GAA AAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GA

         64 GGAGGAGGAG


Statistics
Matches: 52,  Mismatches: 4, Indels: 8
        0.81            0.06        0.12

Matches are distributed among these distances:
   2    5  0.10
   3   47  0.90

ACGTcount: A:0.67, C:0.02, G:0.30, T:0.02


Consensus pattern (3 bp):   
GAA

Done.