Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00074.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3972
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:3349 original size:39 final size:39

Alignment explanation


    Indices: 3295--3372  Score: 156
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       3285 TGTTGGTGTT

                                                   
       3295 CTTCATCAATTGCATCTCAACTCAGTGGTAAAGTTATAA
          1 CTTCATCAATTGCATCTCAACTCAGTGGTAAAGTTATAA

                                                   
       3334 CTTCATCAATTGCATCTCAACTCAGTGGTAAAGTTATAA
          1 CTTCATCAATTGCATCTCAACTCAGTGGTAAAGTTATAA

       3373 AAGAATCTCT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33


Consensus pattern (39 bp):   
CTTCATCAATTGCATCTCAACTCAGTGGTAAAGTTATAA
Done.