Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g00086.C2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6947
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Found at i:3246 original size:210 final size:210
Alignment explanation
Indices: 2921--4119 Score: 1914
Period size: 210 Copynumber: 5.7 Consensus size: 210
2911 AGTGCAATAG
* ** * * * *
2921 ATTAAGCAAGATTGGAGAGGGGTTGTCTACCTCCATTTGTCTTAAAGAATTAAAGCTAAGTGGTT
1 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
* * *
2986 GTGCTAAATTAAGTTTCATTCCAGATTTGGAAGAATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
*
3051 GACTGCCACGAACTGGAAACTATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
3116 TTCCTCGTGTCCAAA
196 TTCCTCGTGTCCAAA
*
3131 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGCATTAAAGCTAAGTGATT
1 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
*
3196 GTGCTAAGTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * * *
3261 GACTGCAACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTCAAAAGCTTCGCAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
3326 TTCCTCGTGTCCAAA
196 TTCCTCGTGTCCAAA
* *
3341 ATTAAGCAAGATTGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAATGATT
1 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
* *
3406 GTGCTGATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATTA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * * *
3471 GGCTGTCACGAACTGGAAACCATTCCGATAAGAGGAAGATGTTTATCTCTTGAAAAGCTTCACGT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
3536 TTCCTCGTGTCCAAA
196 TTCCTCGTGTCCAAA
3551 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
1 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
* *
3616 GTGCTAATTTAAGTTCCATTTCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATTA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* *
3681 GACTGCCACGAACTGGAAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
3746 TTCCTCGTGTCCAAA
196 TTCCTCGTGTCCAAA
*
3761 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTT
1 ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
*
3826 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAGTTTTAGATATATCA
66 GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
* * *
3891 GACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTTATCTCTTGAAAAGCTTCACAT
131 GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
*
3956 TTCCTCCTGT-CAAA
196 TTCCTCGTGTCCAAA
* * * * * * * * ***
3970 ATATCATCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTGAAGAATTGAAGTTAAACAAT
1 AT-TAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGAT
* * * * *
4035 TGTCCTAATTTGAGTTCCATTCTAGATTTGGAAGGATTTTCCTCTCTTCGAATTTTAGATATAGC
65 TGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATC
4100 AGACTGCCACGAACTGGAAA
130 AGACTGCCACGAACTGGAAA
4120 TTGACTGGTT
Statistics
Matches: 920, Mismatches: 68, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
209 6 0.01
210 914 0.99
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (210 bp):
ATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATT
GTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATCA
GACTGCCACGAACTGGAAACTATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGT
TTCCTCGTGTCCAAA
Found at i:4232 original size:135 final size:135
Alignment explanation
Indices: 4010--4254 Score: 409
Period size: 135 Copynumber: 1.8 Consensus size: 135
4000 CCGCCACTTG
* * * * *
4010 TCTTGAAGAATTGAAGTTAAACAATTGTCCTAATTTGAGTTCCATTCTAGATTTGGAAGGATTTT
1 TCTTGAAGAATTAAAGTTAAACAATTGTCCTAATTTAAGTTCCATTCCAAATTTGGAAGGACTTT
* *
4075 CCTCTCTTCGAATTTTAGATATAGCAGACTGCCACGAACTGGAAATTGACTGGTTGTTTACCTCC
66 CCTCTCTTCGAATTTTAAATATAGCAGACTGCCAAGAACTGGAAATTGACTGGTTGTTTACCTCC
4140 ACGAA
131 ACGAA
*
4145 TCTTGAAGAATTAAAGTTAAGCAATTGTCCTAATTTAAGTTCCATTCCAAATTTGGAAGGACTTT
1 TCTTGAAGAATTAAAGTTAAACAATTGTCCTAATTTAAGTTCCATTCCAAATTTGGAAGGACTTT
*
4210 CCTCTCTTCGAATTTTAAATATATCAGACTGCCAAGAACTGGAAA
66 CCTCTCTTCGAATTTTAAATATAGCAGACTGCCAAGAACTGGAAA
4255 CTGTTCCGAT
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
135 101 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (135 bp):
TCTTGAAGAATTAAAGTTAAACAATTGTCCTAATTTAAGTTCCATTCCAAATTTGGAAGGACTTT
CCTCTCTTCGAATTTTAAATATAGCAGACTGCCAAGAACTGGAAATTGACTGGTTGTTTACCTCC
ACGAA
Found at i:4423 original size:345 final size:345
Alignment explanation
Indices: 3777--4464 Score: 1038
Period size: 345 Copynumber: 2.0 Consensus size: 345
3767 CAAGATAGGA
* * *** *
3777 GACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTTGTGCTAATTTAAGTTC
1 GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAGCAATTGTCCTAATTTAAGTTC
* * * * *
3842 CATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAGTTTTAGATATATCAGACTGCCACGAACTGG
66 CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
*
3907 AAACTGTTCCGATAAGAGGAAGATGTTTATCTCTTGAAAAGCTTCACATTTCCTCCTGTCAAAAT
131 AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCCTGTCAAAAT
* * *
3972 ATCATCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTGAAGAATTGAAGTTAAACAATTG
196 ATAAGCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTAAAGAATTGAAGTTAAACAATTG
* * * * * *
4037 TCCTAATTTGAGTTCCATTCTAGATTTGGAAGGATTTTCCTCTCTTCGAATTTTAGATATAGCAG
261 TCCTAATTTAAGTTCCATTCCAAAATTGGAAGGACTTTCCTCTCTTCGAAGTTTAGATATAGCAG
*
4102 ACTGCCACGAACTGGAAATT
326 ACTGCCAAGAACTGGAAATT
* *
4122 GACTGGTTGTTTACCTCCACGAATCTTGAAGAATTAAAGTTAAGCAATTGTCCTAATTTAAGTTC
1 GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAGCAATTGTCCTAATTTAAGTTC
*
4187 CATTCCAAATTTGGAAGGACTTTCCTCTCTTCGAATTTTAAATATATCAGACTGCCAAGAACTGG
66 CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
* * *
4252 AAACTGTTCCGATTAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
131 AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCCTGT-CAAAA
* * * *
4317 T-TAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATT
195 TATAAGCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTAAAGAATTGAAGTTAAACAATT
* *
4381 GTCCTGATTTAAGTTCCATTCCAAAATTGCG-AGGACTTTCCTCTCTTCGAAGTTTAGATATATC
260 GTCCTAATTTAAGTTCCATTCCAAAATTG-GAAGGACTTTCCTCTCTTCGAAGTTTAGATATAGC
4445 AGACTGCCAAGAACTGGAAA
324 AGACTGCCAAGAACTGGAAA
4465 CCGTTCCGAT
Statistics
Matches: 307, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
345 300 0.98
346 7 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (345 bp):
GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAGCAATTGTCCTAATTTAAGTTC
CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACATTTCCTCCTGTCAAAAT
ATAAGCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTAAAGAATTGAAGTTAAACAATTG
TCCTAATTTAAGTTCCATTCCAAAATTGGAAGGACTTTCCTCTCTTCGAAGTTTAGATATAGCAG
ACTGCCAAGAACTGGAAATT
Found at i:4619 original size:555 final size:555
Alignment explanation
Indices: 3567--4674 Score: 1684
Period size: 555 Copynumber: 2.0 Consensus size: 555
3557 CAAGATAGGA
* * ** *
3567 GACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATTGTGCTAATTTAAGTTC
1 GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAGCAATTGTCCTAATTTAAGTTC
* * * * * *
3632 CATTTCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATTAGACTGCCACGAACTGG
66 CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
3697 AAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
131 AAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
* ***
3762 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGGTTG
196 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATTAAAGCTAAGCAATTG
* * * *
3827 TGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAGTTTTAGATATATCAG
261 TCCTAATTTAAGTTCCATTCCAAAATTGGAAGGACTTTCCTCTCTCCGAGTTTTAGATATATCAG
* * *
3892 ACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTTATCTCTTGAAAAGCTTCACATT
326 ACTGCCAAGAACTGGAAACCGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACATT
* * *
3957 TCCTCCTGTCAAAATATCATCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTGAAGAATT
391 TCCTCCTGTCAAAATATAAGCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTAAAGAATT
* * *
4022 GAAGTTAAACAATTGTCCTAATTTGAGTTCCATTCTAGATTTGGAAGGATTTTCCTCTCTTCGAA
456 GAAGTTAAACAATTGTCCTAATTTGAGTTCCATTCCAGATTTGAAAGGAGTTTCCTCTCTTCGAA
*
4087 TTTTAGATATAGCAGACTGCCACGAACTGGAAATT
521 TTTTAGATATAGCAGACTGCCACAAACTGGAAATT
* *
4122 GACTGGTTGTTTACCTCCACGAATCTTGAAGAATTAAAGTTAAGCAATTGTCCTAATTTAAGTTC
1 GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAGCAATTGTCCTAATTTAAGTTC
*
4187 CATTCCAAATTTGGAAGGACTTTCCTCTCTTCGAATTTTAAATATATCAGACTGCCAAGAACTGG
66 CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
** * *
4252 AAACTGTTCCGATTAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
131 AAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
* * *
4317 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTG
196 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATTAAAGCTAAGCAATTG
* *
4382 TCCTGATTTAAGTTCCATTCCAAAATTGCG-AGGACTTTCCTCTCTTCGAAG-TTTAGATATATC
261 TCCTAATTTAAGTTCCATTCCAAAATTG-GAAGGACTTTCCTCTCTCCG-AGTTTTAGATATATC
* *
4445 AGACTGCCAAGAACTGGAAACCGTTCCGATAAGAGGAATATGTTCATCTCTTGAAAAGCTTCACG
324 AGACTGCCAAGAACTGGAAACCGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACA
* * * * *
4510 TTTCCTCGTGTCCAAAAT-TAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTTGTTTTAAAGA
389 TTTCCTCCTGT-CAAAATATAAGCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTAAAGA
* *
4574 ATTGAAGTTAAGCAATTGTCCTAATTT-ACGTTTCATTCCAGATTTGAAAGGAGTTTCCTCTCTT
453 ATTGAAGTTAAACAATTGTCCTAATTTGA-GTTCCATTCCAGATTTGAAAGGAGTTTCCTCTCTT
* *
4638 CGAATTTTATATATATCAGACTGCCACAAACTGGAAA
517 CGAATTTTAGATATAGCAGACTGCCACAAACTGGAAA
4675 CTGTTCCGAT
Statistics
Matches: 497, Mismatches: 52, Indels: 8
0.89 0.09 0.01
Matches are distributed among these distances:
554 1 0.00
555 487 0.98
556 9 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (555 bp):
GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAGCAATTGTCCTAATTTAAGTTC
CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
AAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATTAAAGCTAAGCAATTG
TCCTAATTTAAGTTCCATTCCAAAATTGGAAGGACTTTCCTCTCTCCGAGTTTTAGATATATCAG
ACTGCCAAGAACTGGAAACCGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACATT
TCCTCCTGTCAAAATATAAGCAAGATAGAAGACTGGTTGCCTACCGCCACTTGTCTTAAAGAATT
GAAGTTAAACAATTGTCCTAATTTGAGTTCCATTCCAGATTTGAAAGGAGTTTCCTCTCTTCGAA
TTTTAGATATAGCAGACTGCCACAAACTGGAAATT
Found at i:4823 original size:210 final size:210
Alignment explanation
Indices: 4122--4890 Score: 999
Period size: 210 Copynumber: 3.7 Consensus size: 210
4112 ACTGGAAATT
* *** * *
4122 GACTGGTTGTTTACCTCCACGAATCTTGAAGAATTAAAGTTAAGCAATTGTCCTAATTTAAGTTC
1 GACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTGTCCTAATTTAAGTTC
* *
4187 CATTCCAAATTTGGAAGGACTTTCCTCTCTTCGAATTTTAAATATATCAGACTGCCAAGAACTGG
66 CATTCCAAATTTGAAAGGACTTTCCTCTCTTCGAATTTTATATATATCAGACTGCCAAGAACTGG
*
4252 AAACTGTTCCGATTAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
131 AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
4317 TTAAGCAAGATAGGA
196 TTAAGCAAGATAGGA
*
4332 GACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTGTCCTGATTTAAGTTC
1 GACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTGTCCTAATTTAAGTTC
* ** * *
4397 CATTCCAAAATTGCGAGGACTTTCCTCTCTTCGAAGTTTAGATATATCAGACTGCCAAGAACTGG
66 CATTCCAAATTTGAAAGGACTTTCCTCTCTTCGAATTTTATATATATCAGACTGCCAAGAACTGG
* *
4462 AAACCGTTCCGATAAGAGGAATATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
131 AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
4527 TTAAGCAAGATAGGA
196 TTAAGCAAGATAGGA
* * *
4542 GACTGGTTGTCTACCTCCACTTGTTTTAAAGAATTGAAGTTAAGCAATTGTCCTAATTTACGTTT
1 GACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTGTCCTAATTTAAGTTC
* *
4607 CATTCCAGATTTGAAAGGAGTTTCCTCTCTTCGAATTTTATATATATCAGACTGCCACA-AACTG
66 CATTCCAAATTTGAAAGGACTTTCCTCTCTTCGAATTTTATATATATCAGACTGCCA-AGAACTG
* * * *
4671 GAAACTGTTCCGATAAGAGGAAGATGTGT-ATCTCTTGAGAAGCTTCTCATTTCC-CGGTGTCCT
130 GAAACTGTTCCGATAAGAGGAAGATGT-TCATCTCTTGAAAAGCTTCACGTTTCCTC-GTGTCCA
*
4734 AAATTAAGCAATATAGGA
193 AAATTAAGCAAGATAGGA
* * * * * * * * ** * ** * *
4752 GACGGGTTGTCTACCGCCACTTGCCTCAAGGAGTTAAAGCTATCCCATTGTGGTAACTTAAATTC
1 GACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTGTCCTAATTTAAGTTC
** * * * * * *
4817 CATTCCAGTTTTAAAAGGATTTTCCTCTCTTCATAATTTAAT-TATATCAAACTG-CAACAATCT
66 CATTCCAAATTTGAAAGGACTTTCCTCTCTTC-GAATTTTATATATATCAGACTGCCAAGAA-CT
*
4880 GGAAATTGTTC
129 GGAAACTGTTC
4891 GAATAACAGA
Statistics
Matches: 495, Mismatches: 58, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
208 1 0.00
209 5 0.01
210 480 0.97
211 9 0.02
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (210 bp):
GACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTGTCCTAATTTAAGTTC
CATTCCAAATTTGAAAGGACTTTCCTCTCTTCGAATTTTATATATATCAGACTGCCAAGAACTGG
AAACTGTTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
TTAAGCAAGATAGGA
Found at i:4837 original size:765 final size:765
Alignment explanation
Indices: 3357--4848 Score: 2155
Period size: 765 Copynumber: 2.0 Consensus size: 765
3347 CAAGATTGGA
* * ** * *
3357 GACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAATGATTGTGCTGATTTAAGTTC
1 GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAACAATTGTCCTAATTTAAGTTC
* * * * * * *
3422 CATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATTAGGCTGTCACGAACTGG
66 CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
*
3487 AAACCATTCCGATAAGAGGAAGATGTTTATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
131 AAACCATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
* **
3552 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATTAAAGCTAAGTGATTG
196 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATTAAAGCTAAGCAATTG
* * * * * * *
3617 TGCTAATTTAAGTTCCATTTCAGATTTGGAAGGATTTTCCTCTCTCCGAATTTTAGATATATTAG
261 TCCTAATTTAAGTTCCATTCCAAAATTGGAAGGACTTTCCTCTCTCCGAAGTTTAGATATATCAG
*
3682 ACTGCCACGAACTGGAAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGTT
326 ACTGCCAAGAACTGGAAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGTT
*
3747 TCCTCGTGTCCAAAATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTGAAGAATT
391 TCCTCGTGTCCAAAATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATT
*** * * * *
3812 AAAGCTAAGTGGTTGTGCTAATTTAAGTTCCATTCCAGATTTGGAAGGATTTTCCTCTCTCCGAG
456 AAAGCTAAGCAATTGTCCTAATTTAAGTTCCATTCCAGATTTGAAAGGAGTTTCCTCTCTCCGAA
* *
3877 TTTTAGATATATCAGACTGCCACGAACTGGAAACTGTTCCGATAAGAGGAAGATGTTTATCTCTT
521 TTTTAGATATATCAGACTGCCACAAACTGGAAACTGTTCCGATAAGAGGAAGATGTGTATCTCTT
* * *
3942 GAAAAGCTTCACATTTCCTCCTGTCAAAATATCATCAAGATAGAAGACTGGTTGCCTACCGCCAC
586 GAAAAGCTTCACATTTCCTCCTGTCAAAATATAAGCAAGATAGAAGACGGGTTGCCTACCGCCAC
* * * * * * * * **
4007 TTGTCTTGAAGAATTGAAGTTAAACAATTGTCCTAATTTGAGTTCCATTCTAGATTTGGAAGGAT
651 TTGTCCTCAAGAATTAAAGCTAAACAATTGTCCTAACTTAAATTCCATTCCAGATTTAAAAGGAT
4072 TTTCCTCTCTTCGAATTTTAGATATAGCAGACTGCCACGAACTGGAAATT
716 TTTCCTCTCTTCGAATTTTAGATATAGCAGACTGCCACGAACTGGAAATT
* * *
4122 GACTGGTTGTTTACCTCCACGAATCTTGAAGAATTAAAGTTAAGCAATTGTCCTAATTTAAGTTC
1 GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAACAATTGTCCTAATTTAAGTTC
*
4187 CATTCCAAATTTGGAAGGACTTTCCTCTCTTCGAATTTTAAATATATCAGACTGCCAAGAACTGG
66 CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
** *
4252 AAACTGTTCCGATTAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
131 AAACCATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
* * *
4317 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTTGTCTTAAAGAATTGAAGTTAAGCAATTG
196 TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATTAAAGCTAAGCAATTG
* *
4382 TCCTGATTTAAGTTCCATTCCAAAATTGCG-AGGACTTTCCTCTCTTCGAAGTTTAGATATATCA
261 TCCTAATTTAAGTTCCATTCCAAAATTG-GAAGGACTTTCCTCTCTCCGAAGTTTAGATATATCA
* * *
4446 GACTGCCAAGAACTGGAAACCGTTCCGATAAGAGGAATATGTTCATCTCTTGAAAAGCTTCACGT
325 GACTGCCAAGAACTGGAAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGT
* *
4511 TTCCTCGTGTCCAAAATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTTGTTTTAAAGAAT
390 TTCCTCGTGTCCAAAATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAAT
* * * * *
4576 TGAAGTTAAGCAATTGTCCTAATTTACGTTTCATTCCAGATTTGAAAGGAGTTTCCTCTCTTCGA
455 TAAAGCTAAGCAATTGTCCTAATTTAAGTTCCATTCCAGATTTGAAAGGAGTTTCCTCTCTCCGA
*
4641 ATTTTATATATATCAGACTGCCACAAACTGGAAACTGTTCCGATAAGAGGAAGATGTGTATCTCT
520 ATTTTAGATATATCAGACTGCCACAAACTGGAAACTGTTCCGATAAGAGGAAGATGTGTATCTCT
* * * * * * *
4706 TGAGAAGCTTCTCATTTCC-CGGTGTCCTAAAT-TAAGCAATATAGGAGACGGGTTGTCTACCGC
585 TGAAAAGCTTCACATTTCCTC-CTGT-CAAAATATAAGCAAGATAGAAGACGGGTTGCCTACCGC
* ** * ** *
4769 CACTTG-CCTCAAGGAGTTAAAGCTATCCCATTGTGGTAACTTAAATTCCATTCCAGTTTTAAAA
648 CACTTGTCCTCAA-GAATTAAAGCTAAACAATTGTCCTAACTTAAATTCCATTCCAGATTTAAAA
4833 GGATTTTCCTCTCTTC
712 GGATTTTCCTCTCTTC
4849 ATAATTTAAT
Statistics
Matches: 638, Mismatches: 85, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
764 5 0.01
765 627 0.98
766 6 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (765 bp):
GACTGGTTGTCTACCTCCACGAATCTTGAAGAATTAAAGCTAAACAATTGTCCTAATTTAAGTTC
CATTCCAAATTTGGAAGGACTTTCCTCTCTCCGAATTTTAAATATATCAGACTGCCAAGAACTGG
AAACCATTCCGATAAGAGGAAGATGTTCATCTCTTGAAAAGCTTCACGTTTCCTCGTGTCCAAAA
TTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATTAAAGCTAAGCAATTG
TCCTAATTTAAGTTCCATTCCAAAATTGGAAGGACTTTCCTCTCTCCGAAGTTTAGATATATCAG
ACTGCCAAGAACTGGAAACCATTCCGATAAGAGAAAGATGTTCATCTCTTGAAAAGCTTCACGTT
TCCTCGTGTCCAAAATTAAGCAAGATAGGAGACTGGTTGTCTACCTCCACTAGTCTTAAAGAATT
AAAGCTAAGCAATTGTCCTAATTTAAGTTCCATTCCAGATTTGAAAGGAGTTTCCTCTCTCCGAA
TTTTAGATATATCAGACTGCCACAAACTGGAAACTGTTCCGATAAGAGGAAGATGTGTATCTCTT
GAAAAGCTTCACATTTCCTCCTGTCAAAATATAAGCAAGATAGAAGACGGGTTGCCTACCGCCAC
TTGTCCTCAAGAATTAAAGCTAAACAATTGTCCTAACTTAAATTCCATTCCAGATTTAAAAGGAT
TTTCCTCTCTTCGAATTTTAGATATAGCAGACTGCCACGAACTGGAAATT
Done.