Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00092.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1638
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:1074 original size:33 final size:34

Alignment explanation


    Indices: 1033--1097  Score: 89
    Period size: 33  Copynumber: 1.9  Consensus size: 34

       1023 TGATTCCGAA

                          *                    
       1033 GATGATGAAACT-ACTGCAACTCATCTT-TTCAGT
          1 GATGATGAAA-TAAATGCAACTCATCTTATTCAGT

                                  *         
       1066 GATGATGAAATAAATGCAACTCGTCTTATTCA
          1 GATGATGAAATAAATGCAACTCATCTTATTCA

       1098 AGGAATTTGC


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  32    1  0.04
  33   23  0.82
  34    4  0.14

ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32


Consensus pattern (34 bp):   
GATGATGAAATAAATGCAACTCATCTTATTCAGT
Done.