Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00094.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1739
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35


Found at i:1162 original size:15 final size:15

Alignment explanation


    Indices: 1142--1172  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1132 TGATTTTCCT

                           
       1142 TTTAACATCATATAA
          1 TTTAACATCATATAA

                    *      
       1157 TTTAACATTATATAA
          1 TTTAACATCATATAA

             
       1172 T
          1 T

       1173 AGCTTCAAGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45


Consensus pattern (15 bp):   
TTTAACATCATATAA
Done.